Dash Cytoscape Circular Graph: Error: Unable to get property 'run' of undefined or null reference

Dash Python
1

Dear community,

I am trying to build a circular graph. So far I have finished creating the elements data containing the nodes and edges information. When trying to run dash cytoscape I face the following error when entering the dash site: ‘Dash Cytoscape: Error: Unable to get property ‘run’ of undefined or null reference’

The result should be a circular MultiDiGraph (i.e. a directed graph that has multiple edges between pairs of nodes.). I exported the nodes and edges information from networkx and prepared it for the use in dash cytoscape.

What is wrong in my code?

the relevant code part to create dash cytoscape (just a few lines to see the first results / at least to run it):

import dash
import dash_cytoscape as cyto
import dash_html_components as html

app = dash.Dash(__name__)

app.layout = html.Div([cyto.Cytoscape(
        id='MultiDiGraph',
        layout={'name': 'preset'},
        style={'width': '100%', 'height': '400px'},
        elements=elements
    )])

if __name__ == '__main__':
    app.run_server(debug=True)

Here you can find the content of elements (informations extracted from networkx MultiDiGraph+nx.circular_graph):

elements = [{‘data’: {‘id’: ‘ID 1’, ‘label’: ‘ID 1’}, ‘position’: {‘x’: 1.0, ‘y’: -7.526895533324612e-09}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 2’, ‘label’: ‘ID 2’}, ‘position’: {‘x’: 0.9709418419354026, ‘y’: 0.23931564853771964}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 3’, ‘label’: ‘ID 3’}, ‘position’: {‘x’: 0.8854560269133858, ‘y’: 0.4647231569498663}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 4’, ‘label’: ‘ID 4’}, ‘position’: {‘x’: 0.7485107808329649, ‘y’: 0.663122638833288}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 5’, ‘label’: ‘ID 5’}, ‘position’: {‘x’: 0.5680647541919035, ‘y’: 0.8229838440092517}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 6’, ‘label’: ‘ID 6’}, ‘position’: {‘x’: 0.35460487747874536, ‘y’: 0.9350162562077539}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 7’, ‘label’: ‘ID 7’}, ‘position’: {‘x’: 0.12053669507071725, ‘y’: 0.9927088429220974}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 8’, ‘label’: ‘ID 8’}, ‘position’: {‘x’: -0.1205366423435321, ‘y’: 0.9927088429220974}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 9’, ‘label’: ‘ID 9’}, ‘position’: {‘x’: -0.35460482475156024, ‘y’: 0.9350162562077539}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 10’, ‘label’: ‘ID 10’}, ‘position’: {‘x’: -0.5680646716623963, ‘y’: 0.8229839036138958}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 11’, ‘label’: ‘ID 11’}, ‘position’: {‘x’: -0.7485107579081017, ‘y’: 0.663122638833288}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 12’, ‘label’: ‘ID 12’}, ‘position’: {‘x’: -0.8854559443838786, ‘y’: 0.4647232463568325}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 13’, ‘label’: ‘ID 13’}, ‘position’: {‘x’: -0.9709418190105394, ‘y’: 0.23931566343888067}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 14’, ‘label’: ‘ID 14’}, ‘position’: {‘x’: -0.9999999770751369, ‘y’: -9.494967110472288e-08}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 15’, ‘label’: ‘ID 15’}, ‘position’: {‘x’: -0.9709418190105394, ‘y’: -0.2393156188880276}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 16’, ‘label’: ‘ID 16’}, ‘position’: {‘x’: -0.8854560039885228, ‘y’: -0.4647232018059794}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 17’, ‘label’: ‘ID 17’}, ‘position’: {‘x’: -0.7485108175127458, ‘y’: -0.6631225942824351}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 18’, ‘label’: ‘ID 18’}, ‘position’: {‘x’: -0.5680649100809727, ‘y’: -0.8229837398537546}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 19’, ‘label’: ‘ID 19’}, ‘position’: {‘x’: -0.3546050035654925, ‘y’: -0.9350162116569009}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 20’, ‘label’: ‘ID 20’}, ‘position’: {‘x’: -0.12053670194817619, ‘y’: -0.9927088579758885}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 21’, ‘label’: ‘ID 21’}, ‘position’: {‘x’: 0.12053675467536135, ‘y’: -0.9927088579758885}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 22’, ‘label’: ‘ID 22’}, ‘position’: {‘x’: 0.35460505629267763, ‘y’: -0.9350162116569009}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 23’, ‘label’: ‘ID 23’}, ‘position’: {‘x’: 0.5680645753779712, ‘y’: -0.822983978272331}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 24’, ‘label’: ‘ID 24’}, ‘position’: {‘x’: 0.7485106616236766, ‘y’: -0.6631227730963674}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 25’, ‘label’: ‘ID 25’}, ‘position’: {‘x’: 0.8854560269133858, ‘y’: -0.4647232018059794}, ‘locked’: ‘true’}, {‘data’: {‘id’: ‘ID 26’, ‘label’: ‘ID 26’}, ‘position’: {‘x’: 0.9709418419354026, ‘y’: -0.23931558908570555}, ‘locked’: ‘true’}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 2’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 3’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 4’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 5’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 6’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 7’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 8’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 9’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 10’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 11’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 12’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 13’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 1’, ‘target’: ‘ID 14’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 2’, ‘target’: ‘ID 1’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 2’, ‘target’: ‘ID 6’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 2’, ‘target’: ‘ID 19’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 1’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 4’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 16’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 17’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 21’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 6’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 7’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 18’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 19’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 8’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 10’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 11’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 12’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 13’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 22’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 14’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 3’, ‘target’: ‘ID 20’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 1’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 3’, ‘weight’: 2.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 17’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 21’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 5’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 6’, ‘weight’: 2.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 18’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 8’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 9’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 10’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 11’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 13’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 22’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 4’, ‘target’: ‘ID 14’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 1’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 3’, ‘weight’: 2.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 4’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 16’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 17’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 21’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 6’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 8’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 9’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 10’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 11’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 12’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 13’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 14’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 5’, ‘target’: ‘ID 20’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 3’, ‘weight’: 2.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 4’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 16’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 17’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 21’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 5’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 8’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 10’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 11’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 13’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 6’, ‘target’: ‘ID 14’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 7’, 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‘ID 21’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 5’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 6’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 7’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 18’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 19’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 8’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 10’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 11’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 12’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 13’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 14’, ‘weight’: 2.5}}, {‘data’: {‘source’: ‘ID 9’, ‘target’: ‘ID 20’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 10’, ‘target’: ‘ID 1’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 10’, ‘target’: ‘ID 2’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 10’, ‘target’: ‘ID 3’, ‘weight’: 1.5}}, {‘data’: 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‘ID 2’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 3’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 4’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 17’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 21’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 5’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 6’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 7’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 18’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 19’, ‘weight’: 2.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 8’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 9’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 10’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 12’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 13’, ‘weight’: 1.5}}, {‘data’: {‘source’: ‘ID 11’, ‘target’: ‘ID 22’, ‘weight’: 1.5}}, 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Best,
plotony

2

Hi @plotony,

Welcome to Plotly forum! Here https://github.com/empet/Dash-cytoscape-networks/tree/master/Canadian-universities is an example of app that generates a multidigraph.

Download the files:

computersci-data.json, computersci-style.json and computersci_app.py
and inspect their contents.
The Jupyter Notebook ,Computer-Science.ipynb, explains how the elements and stylesheet are created (i.e. the json files).

From your pasted and non-formatted elements it is difficult to see why your app is not running.

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