Hi!
When I try to install dash-bio package I constantly get this error:
C:\Users\pmbm1>pip install dash-bio==1.0.1
Collecting dash-bio==1.0.1
Using cached dash_bio-1.0.1-py3-none-any.whl
Collecting dash>=1.6.1 (from dash-bio==1.0.1)
Using cached dash-2.9.3-py3-none-any.whl (10.2 MB)
Requirement already satisfied: pandas in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from dash-bio==1.0.1) (1.5.3)
Requirement already satisfied: scipy in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from dash-bio==1.0.1) (1.10.1)
Collecting scikit-learn>=0.20.1 (from dash-bio==1.0.1)
Using cached scikit_learn-1.2.2-cp311-cp311-win_amd64.whl (8.3 MB)
Requirement already satisfied: colour in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from dash-bio==1.0.1) (0.1.5)
Collecting GEOparse>=1.1.0 (from dash-bio==1.0.1)
Using cached GEOparse-2.0.3-py3-none-any.whl
Collecting jsonschema (from dash-bio==1.0.1)
Using cached jsonschema-4.17.3-py3-none-any.whl (90 kB)
Collecting parmed (from dash-bio==1.0.1)
Using cached ParmEd-4.1.0.tar.gz (2.2 MB)
Preparing metadata (setup.py) … done
Collecting periodictable (from dash-bio==1.0.1)
Using cached periodictable-1.6.1-py2.py3-none-any.whl (752 kB)
Requirement already satisfied: requests in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from dash-bio==1.0.1) (2.28.2)
Collecting biopython>=1.77 (from dash-bio==1.0.1)
Using cached biopython-1.81-cp311-cp311-win_amd64.whl (2.7 MB)
Requirement already satisfied: numpy in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from biopython>=1.77->dash-bio==1.0.1) (1.24.1)
Collecting Flask>=1.0.4 (from dash>=1.6.1->dash-bio==1.0.1)
Using cached Flask-2.2.3-py3-none-any.whl (101 kB)
Collecting plotly>=5.0.0 (from dash>=1.6.1->dash-bio==1.0.1)
Using cached plotly-5.14.1-py2.py3-none-any.whl (15.3 MB)
Requirement already satisfied: dash-html-components==2.0.0 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from dash>=1.6.1->dash-bio==1.0.1) (2.0.0)
Requirement already satisfied: dash-core-components==2.0.0 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from dash>=1.6.1->dash-bio==1.0.1) (2.0.0)
Requirement already satisfied: dash-table==5.0.0 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from dash>=1.6.1->dash-bio==1.0.1) (5.0.0)
Requirement already satisfied: tqdm>=4.31.1 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from GEOparse>=1.1.0->dash-bio==1.0.1) (4.65.0)
Requirement already satisfied: python-dateutil>=2.8.1 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from pandas->dash-bio==1.0.1) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from pandas->dash-bio==1.0.1) (2022.7.1)
Requirement already satisfied: charset-normalizer<4,>=2 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from requests->dash-bio==1.0.1) (3.1.0)
Requirement already satisfied: idna<4,>=2.5 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from requests->dash-bio==1.0.1) (3.4)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from requests->dash-bio==1.0.1) (1.26.15)
Requirement already satisfied: certifi>=2017.4.17 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from requests->dash-bio==1.0.1) (2022.12.7)
Collecting joblib>=1.1.1 (from scikit-learn>=0.20.1->dash-bio==1.0.1)
Using cached joblib-1.2.0-py3-none-any.whl (297 kB)
Requirement already satisfied: threadpoolctl>=2.0.0 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from scikit-learn>=0.20.1->dash-bio==1.0.1) (3.1.0)
Requirement already satisfied: attrs>=17.4.0 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from jsonschema->dash-bio==1.0.1) (22.2.0)
Requirement already satisfied: pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from jsonschema->dash-bio==1.0.1) (0.19.3)
Requirement already satisfied: pyparsing in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from periodictable->dash-bio==1.0.1) (3.0.9)
Collecting Werkzeug>=2.2.2 (from Flask>=1.0.4->dash>=1.6.1->dash-bio==1.0.1)
Using cached Werkzeug-2.2.3-py3-none-any.whl (233 kB)
Collecting Jinja2>=3.0 (from Flask>=1.0.4->dash>=1.6.1->dash-bio==1.0.1)
Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB)
Collecting itsdangerous>=2.0 (from Flask>=1.0.4->dash>=1.6.1->dash-bio==1.0.1)
Using cached itsdangerous-2.1.2-py3-none-any.whl (15 kB)
Collecting click>=8.0 (from Flask>=1.0.4->dash>=1.6.1->dash-bio==1.0.1)
Using cached click-8.1.3-py3-none-any.whl (96 kB)
Requirement already satisfied: tenacity>=6.2.0 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from plotly>=5.0.0->dash>=1.6.1->dash-bio==1.0.1) (8.2.2)
Requirement already satisfied: packaging in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from plotly>=5.0.0->dash>=1.6.1->dash-bio==1.0.1) (23.0)
Requirement already satisfied: six>=1.5 in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from python-dateutil>=2.8.1->pandas->dash-bio==1.0.1) (1.16.0)
Requirement already satisfied: colorama in c:\users\pmbm1\appdata\local\programs\python\python311\lib\site-packages (from tqdm>=4.31.1->GEOparse>=1.1.0->dash-bio==1.0.1) (0.4.6)
Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->Flask>=1.0.4->dash>=1.6.1->dash-bio==1.0.1)
Using cached MarkupSafe-2.1.2-cp311-cp311-win_amd64.whl (16 kB)
Building wheels for collected packages: parmed
Building wheel for parmed (setup.py) … error
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [156 lines of output]
running bdist_wheel
running build
running build_py
creating build
creating build\lib.win-amd64-cpython-311
creating build\lib.win-amd64-cpython-311\parmed
copying parmed\constants.py → build\lib.win-amd64-cpython-311\parmed
copying parmed\exceptions.py → build\lib.win-amd64-cpython-311\parmed
copying parmed\geometry.py → build\lib.win-amd64-cpython-311\parmed
copying parmed\parameters.py → build\lib.win-amd64-cpython-311\parmed
copying parmed\periodic_table.py → build\lib.win-amd64-cpython-311\parmed
copying parmed\residue.py → build\lib.win-amd64-cpython-311\parmed
copying parmed\scripts.py → build\lib.win-amd64-cpython-311\parmed
copying parmed\structure.py → build\lib.win-amd64-cpython-311\parmed
copying parmed\symmetry.py → build\lib.win-amd64-cpython-311\parmed
copying parmed\topologyobjects.py → build\lib.win-amd64-cpython-311\parmed
copying parmed\vec3.py → build\lib.win-amd64-cpython-311\parmed
copying parmed_version.py → build\lib.win-amd64-cpython-311\parmed
copying parmed_init_.py → build\lib.win-amd64-cpython-311\parmed
creating build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber\amberformat.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber\asciicrd.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber\mask.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber\netcdffiles.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber\offlib.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber\parameters.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber\readparm.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber\titratable_residues.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber_amberparm.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber_chamberparm.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber_tinkerparm.py → build\lib.win-amd64-cpython-311\parmed\amber
copying parmed\amber_init_.py → build\lib.win-amd64-cpython-311\parmed\amber
creating build\lib.win-amd64-cpython-311\parmed\modeller
copying parmed\modeller\residue.py → build\lib.win-amd64-cpython-311\parmed\modeller
copying parmed\modeller\standardtemplates.py → build\lib.win-amd64-cpython-311\parmed\modeller
copying parmed\modeller_init_.py → build\lib.win-amd64-cpython-311\parmed\modeller
creating build\lib.win-amd64-cpython-311\parmed\tinker
copying parmed\tinker\parameterfile.py → build\lib.win-amd64-cpython-311\parmed\tinker
copying parmed\tinker\system.py → build\lib.win-amd64-cpython-311\parmed\tinker
copying parmed\tinker\tinkerfiles.py → build\lib.win-amd64-cpython-311\parmed\tinker
copying parmed\tinker\topologyobjects.py → build\lib.win-amd64-cpython-311\parmed\tinker
copying parmed\tinker_init_.py → build\lib.win-amd64-cpython-311\parmed\tinker
creating build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\basedimension.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\baseunit.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\constants.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\mymatrix.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\prefix.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\quantity.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\standard_dimensions.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\unit.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\unit_definitions.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\unit_math.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit\unit_operators.py → build\lib.win-amd64-cpython-311\parmed\unit
copying parmed\unit_init_.py → build\lib.win-amd64-cpython-311\parmed\unit
creating build\lib.win-amd64-cpython-311\parmed\amber\mdin
copying parmed\amber\mdin\cntrl.py → build\lib.win-amd64-cpython-311\parmed\amber\mdin
copying parmed\amber\mdin\ewald.py → build\lib.win-amd64-cpython-311\parmed\amber\mdin
copying parmed\amber\mdin\mdin.py → build\lib.win-amd64-cpython-311\parmed\amber\mdin
copying parmed\amber\mdin\pb.py → build\lib.win-amd64-cpython-311\parmed\amber\mdin
copying parmed\amber\mdin\qmmm.py → build\lib.win-amd64-cpython-311\parmed\amber\mdin
copying parmed\amber\mdin\typing.py → build\lib.win-amd64-cpython-311\parmed\amber\mdin
copying parmed\amber\mdin_init_.py → build\lib.win-amd64-cpython-311\parmed\amber\mdin
creating build\lib.win-amd64-cpython-311\parmed\charmm
copying parmed\charmm\charmmcrds.py → build\lib.win-amd64-cpython-311\parmed\charmm
copying parmed\charmm\parameters.py → build\lib.win-amd64-cpython-311\parmed\charmm
copying parmed\charmm\psf.py → build\lib.win-amd64-cpython-311\parmed\charmm
copying parmed\charmm_charmmfile.py → build\lib.win-amd64-cpython-311\parmed\charmm
copying parmed\charmm_init_.py → build\lib.win-amd64-cpython-311\parmed\charmm
creating build\lib.win-amd64-cpython-311\parmed\formats
creating build\lib.win-amd64-cpython-311\parmed\formats\pdbx
copying parmed\formats\pdbx\PdbxContainers.py → build\lib.win-amd64-cpython-311\parmed\formats\pdbx
copying parmed\formats\pdbx\PdbxReader.py → build\lib.win-amd64-cpython-311\parmed\formats\pdbx
copying parmed\formats\pdbx\PdbxWriter.py → build\lib.win-amd64-cpython-311\parmed\formats\pdbx
copying parmed\formats\pdbx_init_.py → build\lib.win-amd64-cpython-311\parmed\formats\pdbx
creating build\lib.win-amd64-cpython-311\parmed\rosetta
copying parmed\rosetta\pose.py → build\lib.win-amd64-cpython-311\parmed\rosetta
copying parmed\rosetta_init_.py → build\lib.win-amd64-cpython-311\parmed\rosetta
creating build\lib.win-amd64-cpython-311\parmed\rdkit
copying parmed\rdkit\rdkit.py → build\lib.win-amd64-cpython-311\parmed\rdkit
copying parmed\rdkit_init_.py → build\lib.win-amd64-cpython-311\parmed\rdkit
copying parmed\formats\mol2.py → build\lib.win-amd64-cpython-311\parmed\formats
copying parmed\formats\pdb.py → build\lib.win-amd64-cpython-311\parmed\formats
copying parmed\formats\pqr.py → build\lib.win-amd64-cpython-311\parmed\formats
copying parmed\formats\psf.py → build\lib.win-amd64-cpython-311\parmed\formats
copying parmed\formats\registry.py → build\lib.win-amd64-cpython-311\parmed\formats
copying parmed\formats\sdf.py → build\lib.win-amd64-cpython-311\parmed\formats
copying parmed\formats_init_.py → build\lib.win-amd64-cpython-311\parmed\formats
creating build\lib.win-amd64-cpython-311\parmed\utils
creating build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat\config.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat\FortranRecordReader.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat\FortranRecordWriter.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat_edit_descriptors.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat_exceptions.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat_input.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat_lexer.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat_misc.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat_output.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat_parser.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
copying parmed\utils\fortranformat_init_.py → build\lib.win-amd64-cpython-311\parmed\utils\fortranformat
creating build\lib.win-amd64-cpython-311\parmed\openmm
copying parmed\openmm\parameters.py → build\lib.win-amd64-cpython-311\parmed\openmm
copying parmed\openmm\reporters.py → build\lib.win-amd64-cpython-311\parmed\openmm
copying parmed\openmm\topsystem.py → build\lib.win-amd64-cpython-311\parmed\openmm
copying parmed\openmm\utils.py → build\lib.win-amd64-cpython-311\parmed\openmm
copying parmed\openmm\xmlfile.py → build\lib.win-amd64-cpython-311\parmed\openmm
copying parmed\openmm_init_.py → build\lib.win-amd64-cpython-311\parmed\openmm
copying parmed\utils\decorators.py → build\lib.win-amd64-cpython-311\parmed\utils
copying parmed\utils\io.py → build\lib.win-amd64-cpython-311\parmed\utils
copying parmed\utils\netcdf.py → build\lib.win-amd64-cpython-311\parmed\utils
copying parmed\utils\pairlist.py → build\lib.win-amd64-cpython-311\parmed\utils
copying parmed\utils\pandautils.py → build\lib.win-amd64-cpython-311\parmed\utils
copying parmed\utils\timer.py → build\lib.win-amd64-cpython-311\parmed\utils
copying parmed\utils_init_.py → build\lib.win-amd64-cpython-311\parmed\utils
creating build\lib.win-amd64-cpython-311\parmed\gromacs
copying parmed\gromacs\gromacsgro.py → build\lib.win-amd64-cpython-311\parmed\gromacs
copying parmed\gromacs\gromacstop.py → build\lib.win-amd64-cpython-311\parmed\gromacs
copying parmed\gromacs_cpp.py → build\lib.win-amd64-cpython-311\parmed\gromacs
copying parmed\gromacs_gromacsfile.py → build\lib.win-amd64-cpython-311\parmed\gromacs
copying parmed\gromacs_init_.py → build\lib.win-amd64-cpython-311\parmed\gromacs
creating build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools\actions.py → build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools\add1264.py → build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools\addljtype.py → build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools\argumentlist.py → build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools\changeradii.py → build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools\checkvalidity.py → build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools\exceptions.py → build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools\logos.py → build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools\parmed_cmd.py → build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools\parmlist.py → build\lib.win-amd64-cpython-311\parmed\tools
copying parmed\tools_init_.py → build\lib.win-amd64-cpython-311\parmed\tools
creating build\lib.win-amd64-cpython-311\parmed\namd
copying parmed\namd\namdbinfiles.py → build\lib.win-amd64-cpython-311\parmed\namd
copying parmed\namd_init_.py → build\lib.win-amd64-cpython-311\parmed\namd
creating build\lib.win-amd64-cpython-311\parmed\tools\simulations
copying parmed\tools\simulations\openmm.py → build\lib.win-amd64-cpython-311\parmed\tools\simulations
copying parmed\tools\simulations\sanderapi.py → build\lib.win-amd64-cpython-311\parmed\tools\simulations
copying parmed\tools\simulations_init_.py → build\lib.win-amd64-cpython-311\parmed\tools\simulations
creating build\lib.win-amd64-cpython-311\parmed\entos
copying parmed\entos\converters.py → build\lib.win-amd64-cpython-311\parmed\entos
copying parmed\entos\imports.py → build\lib.win-amd64-cpython-311\parmed\entos
copying parmed\entos_init_.py → build\lib.win-amd64-cpython-311\parmed\entos
creating build\lib.win-amd64-cpython-311\parmed\dlpoly
copying parmed\dlpoly\dlpolyconfig.py → build\lib.win-amd64-cpython-311\parmed\dlpoly
copying parmed\dlpoly\dlpolyfield.py → build\lib.win-amd64-cpython-311\parmed\dlpoly
copying parmed\dlpoly_init_.py → build\lib.win-amd64-cpython-311\parmed\dlpoly
creating build\lib.win-amd64-cpython-311\parmed\modeller\data
copying parmed\modeller\data\standard_residues.lib → build\lib.win-amd64-cpython-311\parmed\modeller\data
copying parmed\modeller\data\ccd_residue_templates.json → build\lib.win-amd64-cpython-311\parmed\modeller\data
UPDATING build\lib.win-amd64-cpython-311\parmed/_version.py
set build\lib.win-amd64-cpython-311\parmed/_version.py to ‘4.1.0’
running build_ext
building ‘parmed.amber._rdparm’ extension
error: Microsoft Visual C++ 14.0 or greater is required. Get it with “Microsoft C++ Build Tools”: Microsoft C++ Build Tools - Visual Studio
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for parmed
Running setup.py clean for parmed
Failed to build parmed
ERROR: Could not build wheels for parmed, which is required to install pyproject.toml-based projects
So far I have tryed:
-wheels install
-cmake install
-c++ install
-pip upgarde
Any help would be appreciated!